Hi! I’m trying to run my recent sequencing results through the CLIP-seq pipeline but I keep getting the same error - I’ve included screen shots from the Report and the terminal for specifics. I tried running different samples from this batch of sequencing but no difference. In case it was an issue with demultiplexing, I re-ran one of my samples from November that I have previously run successfully, but the error was still present for the CLIP-seq run, so I’m wondering if there’s something going on with the pipeline? Or if there’s something I need to do differently that I haven’t realized yet with the gtf.
Happy to answer any questions to troubleshoot this and appreciate your assistance in advance!
