Max number of samples for RNAseq pipeline at once?

General
1

Hi there,

What’s the max number of samples I should run the RNA seq pipeline on at once? Don’t want to clog the system but I have 65 samples back and ready to analyse :eyes:

Cheers!

Gwyd

2

Hi Gwyd - for RNA-Seq the most we’ve ever had in one run at once was 40. Do you feel like breaking records?

3

I would suggest running in batches of roughly 20 that make sense for your data - this is not for Flow.bio’s sake, but your own so that it’s easier to read the MultiQC reports.